Sizing of Objects


Quantitation is finding out things about the specimen that we can assign exact numbers to. This falls into two areas commonly, size and light amount. Size is the most used area but light amount can be quite useful.

The most common size application is measuring the length of a specimen. Usually this is done with an eyepiece reticule. Reticules come in all sizes and shapes. They are used for routine specimen length measurements and for quite exotic types of measurements. In my experience if the application is simple reticules work well. The more exotic the application, such as projective stereo measurements, they work less well.

Usually a reticule is place in the right eyepiece since, in most heads, the right eyepiece doesn't move. This means that only the right eye sees the reticule and the image. If you look closely though a microscope with a reticule in the eyepiece you can see the image through the reticule.

Some people use two reticules, one in each eyepiece. This drives me crazy. Reticule will never line up perfectly center to center. This lead to an unacceptable amount of eyestrain as far as I'm concerned. If you need a specialized reticule they can be made by several very good companies for not a lot of money. In fact there is such a range of reticule made by reticule companies that usually you will find what you want in stock.

Large research microscopes usually have a place in the intermediate planes of the microscope for reticules. This not only allows you to see the reticule with both eyes but allows the reticule to be photographed. This is a real advantage if you are saying that an object is a given size. Reticule are made that show a line of a know distance, these then appear on the film. This is the easiest way of showing the size of an object.

The most common reticules are linear and net micrometers. The line is either one line or two lines at right angles to each other. These are good for measuring lengths. Net micrometers are squares divided into regular, smaller squares. Net micrometers are good for measuring lengths any were on the field and a good way to get some kind of sense of the area of the object.

The best way to calibrate a reticule is to use a stage micrometer. This is a micrometer of known length that is placed on the stage and viewed with each objective. Masure the known length of the stage micrometer with the eyepiece micrometer and divide the number of divisions (N) you used to measure into the actual length (A) you measured. This gives the differential (D). D=A/N D is the real distance between each mark.

Lets say that you have a 10mm linear reticule divided 100 times. This means that each division of the micrometer is .1mm in actual length. Lets calibrate it on a compound microscope. If you are going to use the 10X objective for measuring then swing in the 10X and place the stage micrometer on the stage. Focus on the stage micrometer and center it using the stage.

Use the eyepiece reticule and measure a distance on the stage micrometer. Lets say we measure from the .2 to the .3 on the stage micrometer. The measurement we get is 1mm, we counted 10 division when we measured, so each division of the eyepiece reticule measures .01 mm.

This is the best way to calibrate a reticule since we are comparing a unknown to a known. This method eliminates any discrepancies caused by magnifications not being exact. Fact is that nothing is perfect so using a know standard is a good idea.

To calibrate a reticule with out a standard you need to know the total magnification of the system up to the reticule. Since the eyepiece is above the reticule we ignore the eyepiece. Look at it this way if you use a magnifying glass to look at a ruler you don't take the magnifying glass into account.

To get the total magnification multiply the magnification of the objective times the magnification of the tube, if any. If there is no tube magnification then the tube magnification is one. Divide the total magnification (TM) into the distance between lines on the reticule. The distance between lines (DL) can be found by dividing he number of lines into the length of the reticule. So the apearant distance between line = DL/TM.

To calibrate a 10X objective on a microscope with a tube factor of 1, a microscope with no tube factor, first find the distance between marks. If the eyepiece reticule is a 10mm divided 100 times then the distance between marks is .1mm. Divide .1mm by the total magnification which is 10 and you get .01 mm. This is the measurement distance between each mark.

This method works but not as well as using a standard. Both methods need to be done for each objective you are going to use. Always use a high quality standared and use a metric standard for metric reticules and an English standard for English. Trying to convert only induces error.

If you need really exact measurements from a reticule you can use a stage micrometer that is traceable to the National Institute for Standards and Technology (NIST). They insure that the standard is accurate by comparing it to known standards. Usually this is not necessary since micrometers measurements are not all that accurate any way.

This brings up the issue of relative or absolute measurement. Relative measurement is used to report percentage differences against some other condition. An example of relative measurement would be measuring the average size of normal cells and abnormal cells in a specimen and reporting the percentage difference not the measured sizes.

An absolute measurement is reporting the actual size of the object based on some standard measurement such as inches or meters. Absolute measurement is used for things such as parts. Industry is interested in the true diameter of drill bits not the variance. Biology based applications use relative size a lot since this can show changes.

Once a microscope is calibrated it is calibrated for life unless you change the configuration. Frequent recalibration of a reticule is a waste of time and money. Some medical inspection persons require this and it is a total crock. If accuracy is a real concern you should use a video based measuring system or a filar micrometer.

Filar micrometers have a moving line visible in an eyepiece that is driven by a micrometer drum. The distance is read of the micrometer drum or of a digital display. These work very well if the specimen is rectilinear. They are used a lot in industry.

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The problem with reticules is that specimens don't always begin and end at a reticule line. You have to move things around to get the measurement. This leads to interpalation errors. If you do a lot of measuring reticules are hard to use. They also don't do area of irregular objects well at all. Were your eye is centered in the field will also influence the measurement.

The end result is that two different persons will read a reticule differently. This difference may be significant or it may not. If it is you will need to use another system.

Video systems are more accurate and easier to use for very exact measurements. There are three general types of video measuring systems, video filars, interactive video and fully automatic. Each has its uses and problems and manufacturers make a wide range of each system.

All video systems use a video camera, mostly black and white. The camera is connected to a computer or digital system, think of it as a black box. The black box does something and out pops the magic number. You see all of this on the monitor. This means that you have to set the microscope up for video. If the microscope isn't set up properly the system will be very difficult to use.

A video filar micrometer shows you the image and either two or four lines. These lines are used to box the specimen or indicate the start and stop point for a length measurement. If the specimen is rectilinear or supposed to be this is an excellent tool. If you are measuring holes, boxes or lines you need to look at one of these.

Interactive video systems usually use a computer with a board installed to show you the specimen and allow you to draw a line around the specimen. As you draw you see the line. Once you get close to the end the system closes the line and ends the measurement.

Now the computer takes over. Using the array of points stored in it the computer calculates the information you ask it to. Normally these systems can do lengths, areas, perimeters and form factors. Form factor tell you something about the shape of the object.

These are as accurate as your drawing. This can be quite accurate. Sometimes they are the only way to do an application. These days they are an excellent trade of since there cost is low and the accuracy is high. However if you need to measure a lot of things they can be very slow. If you want to count large numbers of things they may be no help at all.

Automatic systems are very fast. They can count thousands of items in seconds. These counts can be linked to sizes and statistical analysis done at modern computer speeds. This sound like this is what every one needs but there are problems. What they do they do well and what they don't they don't do at all.

Fully automatic systems use the density or color of the specimen to automatically measure multiple points in the specimen. A image capture board in a computer changes the image to an array of numbers based on the density or the color of the specimen. You then tell the system what constitutes the objects you want to measure based on the density or color.

This is called "thresholding" and the success or failure of the application is based on it. The real world problems are many. The major problem is things in the specimen having the same density as things you want to measure. Most analyzers have "filters" that try to eliminate unwanted objects by shape, size and other criteria.

Filters usually are employed after the actual measurement is taken. If the object doesn't meet the criteria for the object you want to measure it is thrown out of the set of objects that will be reported. On modern computers this takes very little time, you probably wont notice it.

Another problem is touching objects. People are very good at distinguishing touching objects but automatic systems aren't. Each system has ways to reduce the problem but none of them eliminates it. What automatic systems do very will is simple images with lots of contrast. If your specimen is like this or if you can make it like this with different preparation then an automatic system will work very well. If you have complex requirement for a system it may not work at all.

Before you buy an image analyser see it in operation. These are complex programs and need to be thoroughly examined. If it doesn't do the application while you are looking at it then don't buy it.

It is common practice to send the manufacturer of an analyser a specimen with a detailed description of what you want measured. Let them try the application before they show up in your lab. If they can do it then take a long look at it, if not no hard feelings.

Most modern automatic image analyzers use an IBM or Macintosh computer. However some system still use a proprietary computer. I wouldn't consider a proprietary system. In fact a lot of manufacturers now just make the software and support a range of image boards.

The problem with proprietary computers is that computer technology is progressing rapidly. How would you like to be stuck with an old computer in a system when you could get a new, faster computer at a local store? Service is another problem. Computers service and parts are readily available for major computer brands. A proprietary make puts you at the mercy of the manufacturer.

If an automatic image analyser sound like an image processor you are right and have read the last section! Most image analyzers can do image processing. Frequently image analyzers have macro languages or self teaching modes so that you can pre-program a whole processing-analyzing function.

Each analyser whether it is interactive, automatic or a filar will have a calibration routine. In industry it is common to use a N.I.S.T. traceable standard. Using a traceable standard makes all plants and suppliers systems measure identically.
What this means to you

If you need to measure distances reticules work but if you need more accuracy or more complex measurements look to a video based system.